sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNH-A1267-A1302
X
>3F1G-A1276-A1311
X
>3F1E-A1276-A1311
X
>1XMQ-A1271-A1306
X
>1N32-A1276-A1311
X
>2VQE-A1276-A1311
X
>1FJG-A1276-A1311
X
>2UXC-A1276-A1311
X
>2UUB-A1276-A1311
X
>2UUA-A1276-A1311
X
>2VQF-A1276-A1311
X
</seq>
<hsp>
0 1:0.455191285362
0 2:0.450807314192
0 3:0.999993576419
0 4:0.920573469067
0 5:0.952451026807
0 6:0.906416866083
0 7:0.923585097654
0 8:0.876359418927
0 9:0.911061260378
0 10:0.893412752431
1 2:0.0225939986781
1 3:0.656380146357
1 4:0.641165200055
1 5:0.729713886039
1 6:0.695727130482
1 7:0.689521256956
1 8:0.66403782197
1 9:0.664410189787
1 10:0.70650548371
2 3:0.651863498559
2 4:0.636284736929
2 5:0.724724801075
2 6:0.689070405302
2 7:0.681078242053
2 8:0.65766445228
2 9:0.658667255597
2 10:0.697051611816
3 4:0.218707836531
3 5:0.345041893645
3 6:0.388288576159
3 7:0.325736619861
3 8:0.315803802852
3 9:0.27146959094
3 10:0.442534263373
4 5:0.19032999774
4 6:0.308103019782
4 7:0.248264361917
4 8:0.189548142081
4 9:0.178988929985
4 10:0.394167430545
5 6:0.202102349953
5 7:0.188337124802
5 8:0.147793755284
5 9:0.199717188037
5 10:0.303790859854
6 7:0.156951163861
6 8:0.195434166521
6 9:0.315128675842
6 10:0.189665061965
7 8:0.19188174822
7 9:0.238554215306
7 10:0.169214005519
8 9:0.185958337769
8 10:0.281593930464
9 10:0.331032944457
</hsp>