sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3NMA-B1-C1
X
>3F1F-A901-A916
X
>3F1H-A901-A916
X
>3CCR-02183-02189
X
>7MSF-R13-R1
X
>2ZZM-B32-B43
X
>1FFK-0357-0267
X
>1FFK-02136-02142
X
>2NPY-B2-A11
X
</seq>
<hsp>
0 1:0.660849955948
0 2:0.660263205743
0 3:0.503519855465
0 4:0.848333001412
0 5:0.810733348388
0 6:0.99999977139
0 7:0.575466018394
0 8:0.991666640899
1 2:0.0102707916039
1 3:0.359607604728
1 4:0.66168334279
1 5:0.635795966165
1 6:0.518044002603
1 7:0.539614248521
1 8:0.730898912669
2 3:0.357419280725
2 4:0.663919652816
2 5:0.637809782591
2 6:0.517856286416
2 7:0.539869254741
2 8:0.734489200477
3 4:0.67062275518
3 5:0.579795346026
3 6:0.610645768827
3 7:0.345176925057
3 8:0.646441301352
4 5:0.401002447885
4 6:0.829880483251
4 7:0.475023238932
4 8:0.54007764859
5 6:0.592491400897
5 7:0.346039321742
5 8:0.406388904566
6 7:0.67843664291
6 8:0.649131951986
7 8:0.515540911846
</hsp>