sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1YJ9-0261-0259
X
>2OTL-0261-0259
X
>1VQO-0261-0259
X
>3CXC-0261-0259
X
>1Q86-A261-A259
X
>1VQ8-0261-0259
X
>1VQ9-0261-0259
X
>1VQP-0261-0259
X
>1VQN-0261-0259
X
</seq>
<hsp>
0 1:0.345881268127
0 2:0.571103406346
0 3:0.650921334499
0 4:0.395990474791
0 5:1.0
0 6:0.884466122067
0 7:0.670788900805
0 8:0.570228966109
1 2:0.628425725255
1 3:0.512370817198
1 4:0.314840993354
1 5:0.749613274833
1 6:0.683480435184
1 7:0.567286308791
1 8:0.489736155701
2 3:0.75684662873
2 4:0.655281443567
2 5:0.939373819771
2 6:0.628833011821
2 7:0.452985026751
2 8:0.328062930455
3 4:0.421739395679
3 5:0.67168643597
3 6:0.683563335343
3 7:0.544034331105
3 8:0.611932679448
4 5:0.809238151256
4 6:0.749485234677
4 7:0.49639569239
4 8:0.487431474382
5 6:0.395583372323
5 7:0.829686136195
5 8:0.800807586659
6 7:0.579656450534
6 8:0.531768055041
7 8:0.227408063357
</hsp>