sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1FJG-A1041-A1043
X
>1N32-A1041-A1043
X
>1XMQ-A1036-A1038
X
>3R8O-A1062-A1064
X
>2VQF-A1041-A1043
X
>3R8N-A1062-A1064
X
>2UUB-A1041-A1043
X
>2VQE-A1041-A1043
X
</seq>
<hsp>
0 1:0.547840494051
0 2:0.562771833166
0 3:0.562693196624
0 4:0.964534220563
0 5:0.567864749403
0 6:0.717753528504
0 7:0.68966378956
1 2:0.275968848546
1 3:0.666827603144
1 4:0.497012690762
1 5:0.495723889468
1 6:0.294848351619
1 7:0.386111392454
2 3:0.755279854589
2 4:0.516415503342
2 5:0.627945608035
2 6:0.368953269079
2 7:0.503029233829
3 4:0.999990217087
3 5:0.425340656126
3 6:0.836544126548
3 7:0.711204241689
4 5:0.801253792508
4 6:0.295790169865
4 7:0.457217398461
5 6:0.619208282575
5 7:0.52432359475
6 7:0.364267907569
</hsp>