sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1N32-A1115-A1117
X
>2UXC-A1115-A1117
X
>1FJG-A1115-A1117
X
>2UUB-A1115-A1117
X
>2UUA-A1115-A1117
X
>2VQE-A1115-A1117
X
>2VQF-A1115-A1117
X
</seq>
<hsp>
0 1:0.999996153173
0 2:0.499484670909
0 3:0.83104064376
0 4:0.670232108383
0 5:0.800636868678
0 6:0.800636868678
1 2:0.563744924079
1 3:0.270357769109
1 4:0.463441927733
1 5:0.425306733542
1 6:0.425306733542
2 3:0.429698895106
2 4:0.460187058529
2 5:0.520845577001
2 6:0.520845577001
3 4:0.365052841097
3 5:0.352980170754
3 6:0.352980170754
4 5:0.258053681022
4 6:0.258053681022
5 6:1.46766750395e-06
</hsp>