sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1AQ3-R15-R0
X
>3CCS-01479-01625
X
>3CQS-A5-B24
X
>1QC0-C17-D2
X
>3B4B-B0-A18
X
>3L25-C5-F3
X
>2QEK-B3-A20
X
>1YZD-B14-A2
X
>2GCS-B0-A19
X
>2H0S-B0-A20
X
>2H0Z-B0-A19
X
>2VUQ-A5-B2
X
</seq>
<hsp>
0 1:0.80855753102
0 2:0.672434588288
0 3:0.507864974584
0 4:0.716560118341
0 5:0.658903623225
0 6:0.810229639423
0 7:0.792876724568
0 8:0.806450204653
0 9:0.940839115016
0 10:0.928756827136
0 11:0.999997282168
1 2:0.68324734634
1 3:0.583849552509
1 4:0.968118432746
1 5:0.548404069503
1 6:0.510079871718
1 7:0.571586458864
1 8:0.880008617121
1 9:0.756256747129
1 10:0.887945123244
1 11:0.855782743749
2 3:0.471867175666
2 4:0.83946188278
2 5:0.384399303515
2 6:0.603452740191
2 7:0.411980336762
2 8:0.874932038837
2 9:0.864720558601
2 10:0.953542435337
2 11:0.783017823692
3 4:0.742880682623
3 5:0.206613839527
3 6:0.339406853535
3 7:0.405794512075
3 8:0.532366221506
3 9:0.51505433527
3 10:0.596507138122
3 11:0.589294911557
4 5:0.77770993018
4 6:0.852908516638
4 7:0.811896992117
4 8:0.584727937442
4 9:0.864285544781
4 10:0.74781819657
4 11:0.781531529401
5 6:0.251254544093
5 7:0.248623055168
5 8:0.582782458477
5 9:0.501295048661
5 10:0.618676875525
5 11:0.499065749829
6 7:0.336474624886
6 8:0.528502457877
6 9:0.32147516354
6 10:0.506232691624
6 11:0.419671849704
7 8:0.681238820499
7 9:0.562372299993
7 10:0.669837045761
7 11:0.466658031485
8 9:0.363281287495
8 10:0.231333835698
8 11:0.434599128887
9 10:0.243563702589
9 11:0.327863090593
10 11:0.359516791661
</hsp>