sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3SKW-A24-A17
X
>3R8T-A655-A601
X
>2OIY-B3-A20
X
>1DDY-A25-A19
X
>2OIJ-B3-A20
X
>1DDY-G25-G19
X
>3G9C-Q16-Q6
X
>3NJ7-E7-F3
X
>1ZDK-R17-R2
X
>3L3C-Q16-Q6
X
>2J01-A335-A332
X
>3OHJ-A335-A332
X
</seq>
<hsp>
0 1:0.420906473457
0 2:0.568261997563
0 3:0.48640386311
0 4:0.688760696071
0 5:0.529990635234
0 6:0.631315031334
0 7:0.63670426092
0 8:0.815168573894
0 9:0.850926762908
0 10:0.970575702316
0 11:0.999995753036
1 2:0.435506151795
1 3:0.313443260325
1 4:0.513494671359
1 5:0.260767473357
1 6:0.339499821273
1 7:0.366482229807
1 8:0.552470033483
1 9:0.664108463903
1 10:0.750058403502
1 11:0.764178396018
2 3:0.322233204558
2 4:0.152342342817
2 5:0.308789417028
2 6:0.491477835439
2 7:0.275068889702
2 8:0.781167890157
2 9:0.844475075136
2 10:0.705197643559
2 11:0.802274721644
3 4:0.401611475826
3 5:0.174142901211
3 6:0.405008906719
3 7:0.279402690974
3 8:0.597673530988
3 9:0.662401109596
3 10:0.604169095182
3 11:0.641675312236
4 5:0.362185635325
4 6:0.533052647057
4 7:0.280884410483
4 8:0.832975049778
4 9:0.893828129274
4 10:0.726751235129
4 11:0.820967260058
5 6:0.381551630473
5 7:0.215579795901
5 8:0.592389460514
5 9:0.708541123636
5 10:0.606950941614
5 11:0.637241590222
6 7:0.293247994073
6 8:0.356740047321
6 9:0.419931299724
6 10:0.565066166297
6 11:0.586624100526
7 8:0.570599122693
7 9:0.645464035901
7 10:0.540068398984
7 11:0.593555939871
8 9:0.296765800879
8 10:0.509140599304
8 11:0.470212213728
9 10:0.612993338314
9 11:0.559604954644
10 11:0.219520732499
</hsp>