sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1QTQ-B15-B55
X
>3U5B-21276-21304
X
>3KFU-M15-M55
X
>2ZZN-D16-D56
X
>2CSX-D17-D58
X
>1G59-B16-B56
X
>2DXI-D16-D56
X
>2DXI-C16-C56
X
>1FFY-T17-T58
X
</seq>
<hsp>
0 1:0.367459110833
0 2:0.494369606257
0 3:0.389782346278
0 4:0.419109999106
0 5:0.614628857106
0 6:0.516381273994
0 7:0.584085286991
0 8:0.91881756653
1 2:0.327778422574
1 3:0.411007844119
1 4:0.549935027342
1 5:0.63199406433
1 6:0.431203748708
1 7:0.528898136449
1 8:1.0
2 3:0.383456851959
2 4:0.613129829966
2 5:0.617471245082
2 6:0.392745688669
2 7:0.451351845322
2 8:0.939075213105
3 4:0.299387067908
3 5:0.402317171754
3 6:0.350927715608
3 7:0.28053015601
3 8:0.70315253037
4 5:0.41400478136
4 6:0.396407116447
4 7:0.375470788843
4 8:0.605754535132
5 6:0.41166764334
5 7:0.307174957672
5 8:0.539173610176
6 7:0.221683242938
6 8:0.656750735503
7 8:0.536333916962
</hsp>