sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J00-A1342-A1340
X
>3OGE-A1342-A1340
X
>2VQF-A1342-A1340
X
>3F1G-A1342-A1340
X
>1N32-A1342-A1340
X
>2UUB-A1342-A1340
X
>1XMQ-A1336-A1334
X
>2UXC-A1342-A1340
X
>2UUA-A1342-A1340
X
</seq>
<hsp>
0 1:0.506921153208
0 2:0.777531122259
0 3:1.0
0 4:0.525494811126
0 5:0.585261588542
0 6:0.895143564603
0 7:0.724946993982
0 8:0.788929029889
1 2:0.621482536295
1 3:0.752101942335
1 4:0.386833277141
1 5:0.427625777223
1 6:0.666148096573
1 7:0.631006350262
1 8:0.642052849478
2 3:0.399740976589
2 4:0.431700741968
2 5:0.459039677083
2 6:0.4714953395
2 7:0.553747945796
2 8:0.493294973709
3 4:0.598630751841
3 5:0.606702125007
3 6:0.611069874492
3 7:0.705819952996
3 8:0.554757006429
4 5:0.105226806573
4 6:0.419917375637
4 7:0.298126369718
4 8:0.300985449084
5 6:0.359389973983
5 7:0.226426326179
5 8:0.241520266715
6 7:0.290432168649
6 8:0.292131279619
7 8:0.183824245281
</hsp>