sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNI-B108-B14
X
>3BNQ-C18-C16
X
>1GID-B77-B75
X
>1FJG-A1217-A1215
X
>2UUB-A1217-A1215
X
>2UXC-A1217-A1215
X
>3SKL-B22-B20
X
>3BNQ-A18-A16
X
</seq>
<hsp>
0 1:0.95097681306
0 2:0.831895486388
0 3:0.908924867834
0 4:0.806165887058
0 5:0.913655569234
0 6:0.900013386249
0 7:1.0
1 2:0.373922353401
1 3:0.786653500132
1 4:0.621584162026
1 5:0.625416460359
1 6:0.624956041416
1 7:0.499367818333
2 3:0.612099544826
2 4:0.493685933225
2 5:0.521063104512
2 6:0.402885384466
2 7:0.436407278644
3 4:0.25486774085
3 5:0.255693620762
3 6:0.438340111467
3 7:0.437250545059
4 5:0.205487444289
4 6:0.438733613512
4 7:0.372192227174
5 6:0.336647836946
5 7:0.231505369836
6 7:0.278231816645
</hsp>