sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1N32-A336-A337
X
>2QA4-01730-01731
X
>2UUB-A336-A337
X
>3CXC-01731-01732
X
>1YJ9-01731-01732
X
>1QVG-01731-01732
X
>3CCR-01731-01732
X
>1Q81-A1731-A1732
X
>1K8A-A1731-A1732
X
</seq>
<hsp>
0 1:0.734722017891
0 2:0.363972854173
0 3:0.674549896185
0 4:0.999998041714
0 5:0.859918604729
0 6:0.638686252625
0 7:0.682601693257
0 8:0.91389745536
1 2:0.614021247402
1 3:0.715406705945
1 4:0.58811018544
1 5:0.707857989587
1 6:0.458122472586
1 7:0.526048878533
1 8:0.670582592869
2 3:0.45943560631
2 4:0.765217363102
2 5:0.567815792697
2 6:0.492515923021
2 7:0.441326705828
2 8:0.629472303811
3 4:0.491942499567
3 5:0.326648251073
3 6:0.390191910917
3 7:0.351584936126
3 8:0.420116895568
4 5:0.392602844409
4 6:0.464490379293
4 7:0.468748905659
4 8:0.378182084246
5 6:0.499059365568
5 7:0.470116713937
5 8:0.302223655118
6 7:0.372008018805
6 8:0.513650787298
7 8:0.376485474272
</hsp>