sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1F-A410-A409
X
>3OHJ-A403-A402
X
>3R8T-A387-A386
X
>3OHK-A403-A402
X
>3F1H-A410-A409
X
>3OHZ-A403-A402
X
>3OH5-A403-A402
X
>3OI1-A403-A402
X
>3OH7-A403-A402
X
>2ZJR-X322-X321
X
</seq>
<hsp>
0 1:0.335622762129
0 2:0.64482407689
0 3:0.363064051547
0 4:0.0338029261138
0 5:0.389460508774
0 6:0.274910247824
0 7:0.395252865199
0 8:0.310294541401
0 9:0.851809385065
1 2:0.609760355301
1 3:0.0656678592496
1 4:0.332333362899
1 5:0.184166976994
1 6:0.169791759481
1 7:0.201447505347
1 8:0.184940008658
1 9:0.999997567004
2 3:0.610963212507
2 4:0.631007601001
2 5:0.480982575971
2 6:0.587427435481
2 7:0.474110543324
2 8:0.582452568014
2 9:0.708202465203
3 4:0.357840894954
3 5:0.185165933928
3 6:0.177664164357
3 7:0.190040194637
3 8:0.170132618988
3 9:0.999326545874
4 5:0.383095679745
4 6:0.262008130577
4 7:0.386137562356
4 8:0.295413880898
4 9:0.830253029023
5 6:0.272070932327
5 7:0.0611678953259
5 8:0.265666042114
5 9:0.941432191951
6 7:0.27106936897
6 8:0.0718849764856
6 9:0.883311510713
7 8:0.251949891937
7 9:0.927378986093
8 9:0.881872970131
</hsp>