sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1QU2-T7-T13
X
>2HO6-B103-B82
X
>2AZX-D52-D56
X
>3F1G-A1324-A1351
X
>2QEX-02176-02210
X
>2J00-A459-A441
X
>2J02-V7-V13
X
>3CCE-02512-02650
X
>3CCM-02512-02650
X
>3RG5-A66-A70
X
>1QU3-T7-T13
X
>2J03-A1561-A1548
X
</seq>
<hsp>
0 1:0.36049921196
0 2:0.333286776665
0 3:0.772236949234
0 4:0.560909752804
0 5:0.483852737863
0 6:0.561779487892
0 7:0.590352603398
0 8:0.484904042902
0 9:0.505273324178
0 10:0.332700107406
0 11:0.448662662836
1 2:0.32682332648
1 3:0.977852709768
1 4:0.772413937904
1 5:0.590713956489
1 6:0.657378257253
1 7:0.785966584601
1 8:0.697857171609
1 9:0.785108730129
1 10:0.61633066574
1 11:0.575901587457
2 3:0.863466114168
2 4:0.675732253207
2 5:0.44677645097
2 6:0.501128509679
2 7:0.774004822912
2 8:0.690478609542
2 9:0.667819523581
2 10:0.558693344211
2 11:0.617259517483
3 4:0.245749430298
3 5:0.999999838954
3 6:0.606227106061
3 7:0.891964747148
3 8:0.797785167241
3 9:0.366234437537
3 10:0.634325640616
3 11:0.614888261831
4 5:0.796235178949
4 6:0.431351827605
4 7:0.688211203624
4 8:0.585027548812
4 9:0.254757907458
4 10:0.440169149849
4 11:0.414608263102
5 6:0.544173073219
5 7:0.527847104219
5 8:0.514332643571
5 9:0.728652818421
5 10:0.518356133414
5 11:0.650930659007
6 7:0.632157030079
6 8:0.568916683743
6 9:0.530037846286
6 10:0.522425262713
6 11:0.483457448939
7 8:0.130035134644
7 9:0.638172522534
7 10:0.409175159415
7 11:0.458916973588
8 9:0.537481526608
8 10:0.30570534231
8 11:0.356915421914
9 10:0.307986475492
9 11:0.449690429139
10 11:0.323225684203
</hsp>