sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1ZJW-B51-B55
X
>2AZX-C52-C56
X
>3KNH-X7-X13
X
>3R8S-A1547-A1627
X
>3FOZ-D4-D10
X
>2GDI-Y29-Y33
X
>1JJ2-0301-0305
X
>3U5D-1192-1196
X
>1EUY-B6-B12
X
</seq>
<hsp>
0 1:0.353140997067
0 2:1.0
0 3:0.847614367565
0 4:0.852963245658
0 5:0.763014349268
0 6:0.751419826507
0 7:0.834188498035
0 8:0.763776313368
1 2:0.883842893853
1 3:0.621425143323
1 4:0.71761555995
1 5:0.606178952472
1 6:0.617166133402
1 7:0.652756198441
1 8:0.569809293441
2 3:0.481369570798
2 4:0.237094750724
2 5:0.349082249869
2 6:0.389623466409
2 7:0.376841042878
2 8:0.440796833207
3 4:0.379919615341
3 5:0.252194626197
3 6:0.393523496376
3 7:0.332645513214
3 8:0.328430275253
4 5:0.204552294871
4 6:0.244618202658
4 7:0.256383316241
4 8:0.268510072563
5 6:0.175487977857
5 7:0.194661446703
5 8:0.191189016216
6 7:0.139435437144
6 8:0.146869594569
7 8:0.125157288726
</hsp>