sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1E-A779-A759
X
>1TN2-A7-A13
X
>1TN1-A7-A13
X
>2UUB-A313-A317
X
>2ZZN-D52-D56
X
>3TRA-A7-A13
X
>2DXI-D52-D56
X
>2CV1-C7-C13
X
</seq>
<hsp>
0 1:1.0
0 2:1.0
0 3:0.83802481221
0 4:0.998369177298
0 5:0.845032271298
0 6:0.867366403786
0 7:0.888880631509
1 2:9.90386220625e-07
1 3:0.515866833105
1 4:0.369838871238
1 5:0.437720876994
1 6:0.557056217294
1 7:0.493209950951
2 3:0.515866833105
2 4:0.369838871238
2 5:0.437720876994
2 6:0.557056217294
2 7:0.493209950951
3 4:0.411598029292
3 5:0.492788091558
3 6:0.648401506581
3 7:0.575032767937
4 5:0.543390552037
4 6:0.480108738469
4 7:0.411217386336
5 6:0.514049083126
5 7:0.487541301875
6 7:0.56013148844
</hsp>