sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A2020-A2025
X
>2J01-A1957-A542
X
>2J03-A187-A171
X
>1FFY-T54-T58
X
>2CV2-C52-C56
X
>3OHZ-A1519-A1368
X
>2CV1-D52-D56
X
</seq>
<hsp>
0 1:0.60630323357
0 2:0.54256837941
0 3:0.667805504234
0 4:0.517753317975
0 5:0.498194074383
0 6:0.459326363938
1 2:0.999997981582
1 3:0.456683868447
1 4:0.832351506332
1 5:0.571526472645
1 6:0.646093699931
2 3:0.810183369426
2 4:0.378279432302
2 5:0.66516565313
2 6:0.449932660859
3 4:0.669646167861
3 5:0.564585649173
3 6:0.492733400826
4 5:0.367099599661
4 6:0.283955810082
5 6:0.300611514868
</hsp>