sequences=5
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OHJ-A1136-A827
X
>3R8N-A1346-A1372
X
>1NJI-A1252-A899
X
>1Q82-A1252-A899
X
>2J00-W7-W13
X
</seq>
<hsp>
0 1:0.806307420014
0 2:0.363453285937
0 3:0.380018772369
0 4:0.872691312423
1 2:0.806302901694
1 3:0.800682737841
1 4:1.0
2 3:0.180417120542
2 4:0.695583546581
3 4:0.788261185842
</hsp>