sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8S-A1319-A1281
X
>3I56-02260-02245
X
>1VQ5-02260-02245
X
>1VQ4-02260-02245
X
>1VQ6-02260-02245
X
>1VQ7-02260-02245
X
>1YJ9-02260-02245
X
>1S72-02260-02245
X
>1YI2-02260-02245
X
>1K9M-A2260-A2245
X
</seq>
<hsp>
0 1:0.829828266602
0 2:0.797881728155
0 3:0.852780270806
0 4:0.930330788563
0 5:0.801352707047
0 6:0.924167559842
0 7:0.966322075715
0 8:0.929171727239
0 9:0.99999900975
1 2:0.136530551872
1 3:0.154867370085
1 4:0.246839968162
1 5:0.217259498822
1 6:0.296324646911
1 7:0.374222301241
1 8:0.275768426966
1 9:0.352609275721
2 3:0.121130265582
2 4:0.175061269596
2 5:0.112599638531
2 6:0.225479417731
2 7:0.301193590879
2 8:0.201413632977
2 9:0.289970795771
3 4:0.19264376951
3 5:0.10275284607
3 6:0.229825982345
3 7:0.24004048874
3 8:0.181205789939
3 9:0.244598342994
4 5:0.186520990623
4 6:0.138784353946
4 7:0.215903828229
4 8:0.118903670961
4 9:0.160237087135
5 6:0.208104954538
5 7:0.220476137519
5 8:0.167892469539
5 9:0.238536740961
6 7:0.235579276652
6 8:0.0840578940612
6 9:0.179686784243
7 8:0.183036863301
7 9:0.104249650788
8 9:0.147120244259
</hsp>