sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5H-52157-51402
X
>2GDI-Y38-Y31
X
>2HOL-A35-A28
X
>2VQF-A1328-A1264
X
>3OHY-A391-A599
X
>3R8T-A1356-A1802
X
>3OGE-A391-A599
X
>2ZJR-X1628-X2642
X
>3OHD-A391-A599
X
>3R8O-A399-A619
X
</seq>
<hsp>
0 1:0.712961845643
0 2:0.74817367223
0 3:0.47707200041
0 4:0.609322773518
0 5:0.67304664967
0 6:0.775591980514
0 7:0.848417413502
0 8:0.802039571413
0 9:0.682244841119
1 2:0.221986103899
1 3:0.999995825338
1 4:0.784314468537
1 5:0.968819231767
1 6:0.763003221929
1 7:0.780577060846
1 8:0.852545437049
1 9:0.855726087871
2 3:0.99663527963
2 4:0.840148634803
2 5:0.959641125041
2 6:0.778346128476
2 7:0.837509767981
2 8:0.843744601432
2 9:0.851820239091
3 4:0.73835310842
3 5:0.543965358169
3 6:0.88571143418
3 7:0.996829871397
3 8:0.943213757914
3 9:0.678087182445
4 5:0.402004187341
4 6:0.398912490602
4 7:0.362395696316
4 8:0.447932766158
4 9:0.374682591386
5 6:0.588343788915
5 7:0.650051954782
5 8:0.630142918744
5 9:0.388882989834
6 7:0.313782178751
6 8:0.245309103009
6 9:0.278439370328
7 8:0.341358650323
7 9:0.441850313502
8 9:0.338465632147
</hsp>