sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2AWE-D5-B5
X
>2AWE-C5-A5
X
>2AWE-A5-D5
X
>2AWE-B5-C5
X
>2AWE-G5-E5
X
>2AWE-H5-F5
X
>1HR2-B5-B156
X
>1GID-B4-B156
X
>1GID-A4-A156
X
</seq>
<hsp>
0 1:0.120899042799
0 2:0.142590338965
0 3:0.15117632314
0 4:0.245118839898
0 5:0.201718318339
0 6:0.635482050445
0 7:0.748388798126
0 8:0.984642592083
1 2:0.0954542175747
1 3:0.114802464389
1 4:0.240806001249
1 5:0.161191060233
1 6:0.637654476899
1 7:0.749042328045
1 8:0.999997667912
2 3:0.149321982667
2 4:0.256519228773
2 5:0.205513082643
2 6:0.590021873821
2 7:0.694283402134
2 8:0.961441178829
3 4:0.137543201321
3 5:0.115889080111
3 6:0.600686630829
3 7:0.701291906079
3 8:0.932043965258
4 5:0.154255777883
4 6:0.562937687466
4 7:0.646624729477
4 8:0.840248816632
5 6:0.601860299838
5 7:0.713001985443
5 8:0.932480343209
6 7:0.240440717836
6 8:0.52960534605
7 8:0.364002245059
</hsp>