ClaRNA

Doublet Group distance statistics: 53428

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Distances from reference structure (by RMSD)

2, 13, 16, 10, 9, 2, 2, 3, 12, 10, 7, 0, 1, 0, 0, 0, 0, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
C5 A 0, 0.004, 0.014, 0.024, 0.043 max_d=0.043 avg_d=0.014 std_dev=0.010
N3 A 0, 0.003, 0.014, 0.025, 0.049 max_d=0.049 avg_d=0.014 std_dev=0.011
N1 A 0, 0.003, 0.016, 0.028, 0.065 max_d=0.065 avg_d=0.016 std_dev=0.013
C4 A 0, 0.005, 0.018, 0.032, 0.073 max_d=0.073 avg_d=0.018 std_dev=0.013
C2 A 0, 0.006, 0.019, 0.033, 0.057 max_d=0.057 avg_d=0.019 std_dev=0.013
C6 A 0, 0.005, 0.018, 0.032, 0.054 max_d=0.054 avg_d=0.018 std_dev=0.014
C1' A 0, 0.006, 0.022, 0.039, 0.080 max_d=0.080 avg_d=0.022 std_dev=0.016
O2 A 0, 0.012, 0.044, 0.076, 0.158 max_d=0.158 avg_d=0.044 std_dev=0.032
O4 A 0, 0.029, 0.101, 0.172, 0.333 max_d=0.333 avg_d=0.101 std_dev=0.071
O2' B 0, 0.181, 0.396, 0.612, 1.073 max_d=1.073 avg_d=0.396 std_dev=0.215
O4' A 0, -0.093, 0.287, 0.668, 1.176 max_d=1.176 avg_d=0.287 std_dev=0.380
C2' A 0, -0.129, 0.313, 0.755, 1.290 max_d=1.290 avg_d=0.313 std_dev=0.442
C2' B 0, 0.174, 0.623, 1.073, 1.445 max_d=1.445 avg_d=0.623 std_dev=0.449
O5' A 0, 0.020, 0.581, 1.142, 1.953 max_d=1.953 avg_d=0.581 std_dev=0.561
C4' A 0, -0.142, 0.429, 1.000, 1.720 max_d=1.720 avg_d=0.429 std_dev=0.571
C3' A 0, -0.153, 0.437, 1.027, 1.707 max_d=1.707 avg_d=0.437 std_dev=0.590
C3' B 0, 0.204, 0.831, 1.458, 2.346 max_d=2.346 avg_d=0.831 std_dev=0.627
P A 0, 0.105, 0.789, 1.472, 2.188 max_d=2.188 avg_d=0.789 std_dev=0.684
C5' A 0, -0.128, 0.605, 1.338, 2.278 max_d=2.278 avg_d=0.605 std_dev=0.733
O2' A 0, -0.236, 0.575, 1.385, 2.296 max_d=2.296 avg_d=0.575 std_dev=0.810
OP2 A 0, 0.135, 0.949, 1.763, 2.762 max_d=2.762 avg_d=0.949 std_dev=0.814
OP1 A 0, 0.100, 0.916, 1.733, 3.933 max_d=3.933 avg_d=0.916 std_dev=0.816
O3' A 0, -0.262, 0.627, 1.516, 2.906 max_d=2.906 avg_d=0.627 std_dev=0.889
O3' B 0, -0.060, 1.358, 2.775, 3.806 max_d=3.806 avg_d=1.358 std_dev=1.417
C4' B 0, 0.140, 1.672, 3.203, 4.480 max_d=4.480 avg_d=1.672 std_dev=1.531
C1' B 0, -0.061, 1.517, 3.096, 4.280 max_d=4.280 avg_d=1.517 std_dev=1.578
O4' B 0, 0.088, 1.947, 3.806, 5.203 max_d=5.203 avg_d=1.947 std_dev=1.859
O5' B 0, -0.158, 1.708, 3.574, 8.371 max_d=8.371 avg_d=1.708 std_dev=1.866
C5' B 0, 0.129, 2.102, 4.075, 6.427 max_d=6.427 avg_d=2.102 std_dev=1.973
P B 0, -0.328, 2.030, 4.388, 11.155 max_d=11.155 avg_d=2.030 std_dev=2.358
OP2 B 0, -0.405, 2.048, 4.500, 11.336 max_d=11.336 avg_d=2.048 std_dev=2.453
N1 B 0, -0.369, 2.144, 4.657, 6.281 max_d=6.281 avg_d=2.144 std_dev=2.513
OP1 B 0, -0.290, 2.473, 5.236, 12.809 max_d=12.809 avg_d=2.473 std_dev=2.763
C6 B 0, -0.415, 2.402, 5.220, 7.111 max_d=7.111 avg_d=2.402 std_dev=2.818
O2 B 0, -0.474, 2.505, 5.484, 7.457 max_d=7.457 avg_d=2.505 std_dev=2.979
C2 B 0, -0.624, 2.660, 5.944, 7.850 max_d=7.850 avg_d=2.660 std_dev=3.284
C5 B 0, -0.770, 3.121, 7.011, 9.428 max_d=9.428 avg_d=3.121 std_dev=3.890
N3 B 0, -0.979, 3.416, 7.810, 10.180 max_d=10.180 avg_d=3.416 std_dev=4.395
C4 B 0, -1.079, 3.633, 8.345, 11.024 max_d=11.024 avg_d=3.633 std_dev=4.712
N4 B 0, -1.421, 4.432, 10.285, 13.549 max_d=13.549 avg_d=4.432 std_dev=5.853

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.03 0.01 0.01 0.03 0.01 0.02 0.07 0.02 0.01 0.02 0.05 0.02 0.29 0.03 0.01 0.32 0.40 0.26 0.29
C2 0.03 0.00 0.15 0.21 0.01 0.05 0.02 0.06 0.01 0.01 0.01 0.01 0.17 0.15 0.02 0.08 0.44 0.49 0.42 0.43
C2' 0.01 0.15 0.00 0.00 0.05 0.01 0.15 0.18 0.19 0.03 0.10 0.30 0.00 0.02 0.05 0.02 0.62 0.78 0.70 0.70
C3' 0.01 0.21 0.00 0.00 0.28 0.01 0.24 0.02 0.19 0.16 0.27 0.19 0.02 0.01 0.31 0.02 0.30 0.50 0.19 0.34
C4 0.03 0.01 0.05 0.28 0.00 0.09 0.01 0.09 0.01 0.02 0.01 0.01 0.36 0.07 0.01 0.05 0.56 0.58 0.55 0.56
C4' 0.01 0.05 0.01 0.01 0.09 0.00 0.10 0.01 0.09 0.05 0.06 0.07 0.28 0.02 0.10 0.01 0.02 0.16 0.20 0.03
C5 0.02 0.02 0.15 0.24 0.01 0.10 0.00 0.12 0.01 0.01 0.01 0.02 0.38 0.11 0.02 0.06 0.59 0.59 0.53 0.57
C5' 0.07 0.06 0.18 0.02 0.09 0.01 0.12 0.00 0.11 0.07 0.07 0.07 0.11 0.23 0.11 0.01 0.01 0.12 0.32 0.02
C6 0.02 0.01 0.19 0.19 0.01 0.09 0.01 0.11 0.00 0.01 0.01 0.02 0.33 0.10 0.02 0.08 0.55 0.54 0.44 0.51
N1 0.01 0.01 0.03 0.16 0.02 0.05 0.01 0.07 0.01 0.00 0.01 0.02 0.20 0.12 0.02 0.02 0.45 0.48 0.38 0.41
N3 0.02 0.01 0.10 0.27 0.01 0.06 0.01 0.07 0.01 0.01 0.00 0.01 0.27 0.08 0.02 0.07 0.51 0.54 0.50 0.50
O2 0.05 0.01 0.30 0.19 0.01 0.07 0.02 0.07 0.02 0.02 0.01 0.00 0.11 0.25 0.02 0.13 0.38 0.45 0.39 0.37
O2' 0.02 0.17 0.00 0.02 0.36 0.28 0.38 0.11 0.33 0.20 0.27 0.11 0.00 0.04 0.39 0.18 0.32 0.60 0.66 0.49
O3' 0.29 0.15 0.02 0.01 0.07 0.02 0.11 0.23 0.10 0.12 0.08 0.25 0.04 0.00 0.11 0.18 0.12 0.18 0.17 0.10
O4 0.03 0.02 0.05 0.31 0.01 0.10 0.02 0.11 0.02 0.02 0.02 0.02 0.39 0.11 0.00 0.06 0.58 0.61 0.59 0.59
O4' 0.01 0.08 0.02 0.02 0.05 0.01 0.06 0.01 0.08 0.02 0.07 0.13 0.18 0.18 0.06 0.00 0.06 0.17 0.24 0.07
O5' 0.32 0.44 0.62 0.30 0.56 0.02 0.59 0.01 0.55 0.45 0.51 0.38 0.32 0.12 0.58 0.06 0.00 0.02 0.02 0.01
OP1 0.40 0.49 0.78 0.50 0.58 0.16 0.59 0.12 0.54 0.48 0.54 0.45 0.60 0.18 0.61 0.17 0.02 0.00 0.01 0.01
OP2 0.26 0.42 0.70 0.19 0.55 0.20 0.53 0.32 0.44 0.38 0.50 0.39 0.66 0.17 0.59 0.24 0.02 0.01 0.00 0.01
P 0.29 0.43 0.70 0.34 0.56 0.03 0.57 0.02 0.51 0.41 0.50 0.37 0.49 0.10 0.59 0.07 0.01 0.01 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.52 2.24 0.32 0.49 3.40 1.09 2.78 1.29 1.91 1.59 3.15 4.07 1.84 0.16 0.91 0.53 1.15 1.31 1.37 1.16
C2 0.42 1.84 0.29 0.40 2.58 1.00 2.16 1.07 1.57 1.35 2.45 2.91 1.49 0.16 0.69 0.53 0.89 1.03 1.06 0.87
C2' 0.13 1.73 0.19 0.77 2.88 1.50 2.29 1.76 1.42 1.10 2.61 3.59 1.39 0.23 1.16 0.87 1.44 1.85 1.58 1.52
C3' 0.12 1.92 0.20 0.74 3.24 1.44 2.58 1.70 1.61 1.24 2.91 4.10 1.53 0.27 1.13 0.78 1.41 1.78 1.63 1.51
C4 0.24 1.16 0.20 0.21 1.59 0.76 1.29 0.79 0.91 0.79 1.56 1.84 1.01 0.18 0.17 0.58 0.75 0.96 1.15 0.88
C4' 0.51 2.43 0.31 0.52 3.75 1.12 2.99 1.37 2.00 1.67 3.47 4.65 2.05 0.13 0.93 0.46 1.21 1.45 1.49 1.28
C5 0.29 1.47 0.21 0.22 2.05 0.81 1.63 0.90 1.13 0.98 2.01 2.41 1.30 0.17 0.21 0.57 0.86 1.09 1.30 1.01
C5' 0.50 2.41 0.32 0.43 3.64 1.05 2.87 1.31 1.91 1.63 3.43 4.52 2.09 0.16 0.76 0.45 1.16 1.44 1.51 1.28
C6 0.38 1.83 0.25 0.29 2.61 0.91 2.08 1.02 1.44 1.24 2.53 3.09 1.59 0.16 0.44 0.55 0.94 1.15 1.33 1.04
N1 0.44 2.01 0.29 0.39 2.90 1.00 2.36 1.12 1.65 1.41 2.76 3.39 1.68 0.16 0.67 0.54 0.99 1.15 1.25 1.01
N3 0.29 1.38 0.23 0.25 1.85 0.84 1.55 0.84 1.14 0.99 1.79 2.08 1.13 0.16 0.33 0.55 0.70 0.87 0.97 0.74
O2 0.50 1.93 0.35 0.53 2.80 1.10 2.45 1.20 1.81 1.50 2.56 3.10 1.50 0.19 0.98 0.52 0.99 1.09 1.00 0.90
O2' 0.45 1.78 0.38 0.60 2.89 1.35 2.43 1.67 1.64 1.29 2.57 3.52 1.42 0.30 1.03 0.87 1.46 1.85 1.67 1.53
O3' 0.47 2.25 0.44 0.53 3.70 1.21 3.07 1.54 2.05 1.62 3.28 4.63 1.81 0.24 0.94 0.59 1.37 1.64 1.62 1.45
O4 0.23 0.67 0.19 0.27 0.95 0.68 0.78 0.73 0.55 0.44 0.92 1.12 0.59 0.21 0.41 0.61 0.76 0.98 1.21 0.95
O4' 0.73 2.60 0.43 0.40 3.82 0.92 3.08 1.12 2.16 1.86 3.61 4.62 2.23 0.21 0.78 0.45 1.08 1.17 1.37 1.10
O5' 0.89 2.57 0.69 0.33 3.66 0.85 2.97 1.05 2.12 1.87 3.48 4.43 2.28 0.57 0.43 0.65 1.14 1.30 1.63 1.25
OP1 0.82 2.44 0.71 0.43 3.60 0.95 2.92 1.15 2.05 1.77 3.37 4.43 2.14 0.63 0.53 0.67 1.20 1.43 1.71 1.34
OP2 0.74 2.14 0.65 0.38 3.08 0.85 2.51 1.02 1.78 1.55 2.92 3.74 1.89 0.59 0.39 0.69 1.18 1.44 1.79 1.38
P 0.84 2.42 0.67 0.37 3.47 0.88 2.82 1.07 2.00 1.75 3.30 4.24 2.14 0.57 0.40 0.69 1.17 1.39 1.73 1.33

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.03 0.00 0.02 0.02 0.01 0.01 0.05 0.02 0.01 0.03 0.02 0.06 0.02 0.27 0.01 0.19 0.35 0.28 0.16
C2 0.03 0.00 0.21 0.30 0.01 0.07 0.01 0.15 0.01 0.01 0.01 0.01 0.01 0.18 0.10 0.09 0.24 0.52 0.64 0.32
C2' 0.00 0.21 0.00 0.01 0.04 0.03 0.13 0.13 0.18 0.02 0.16 0.05 0.37 0.00 0.02 0.03 0.50 0.39 0.62 0.48
C3' 0.02 0.30 0.01 0.00 0.42 0.01 0.40 0.02 0.33 0.26 0.38 0.45 0.25 0.02 0.01 0.03 0.37 0.36 0.61 0.36
C4 0.02 0.01 0.04 0.42 0.00 0.18 0.00 0.29 0.01 0.01 0.00 0.01 0.01 0.37 0.23 0.03 0.40 0.73 1.09 0.54
C4' 0.01 0.07 0.03 0.01 0.18 0.00 0.23 0.01 0.21 0.11 0.11 0.19 0.07 0.31 0.02 0.00 0.02 0.20 0.28 0.07
C5 0.01 0.01 0.13 0.40 0.00 0.23 0.00 0.35 0.00 0.01 0.01 0.01 0.02 0.42 0.29 0.07 0.46 0.79 1.14 0.59
C5' 0.05 0.15 0.13 0.02 0.29 0.01 0.35 0.00 0.31 0.17 0.21 0.33 0.10 0.18 0.19 0.02 0.01 0.27 0.31 0.01
C6 0.02 0.01 0.18 0.33 0.01 0.21 0.00 0.31 0.00 0.00 0.01 0.01 0.02 0.37 0.20 0.10 0.41 0.69 0.87 0.48
N1 0.01 0.01 0.02 0.26 0.01 0.11 0.01 0.17 0.00 0.00 0.01 0.01 0.02 0.22 0.05 0.02 0.27 0.52 0.59 0.32
N3 0.03 0.01 0.16 0.38 0.00 0.11 0.01 0.21 0.01 0.01 0.00 0.01 0.01 0.27 0.13 0.07 0.32 0.62 0.87 0.42
N4 0.02 0.01 0.05 0.45 0.01 0.19 0.01 0.33 0.01 0.01 0.01 0.00 0.02 0.41 0.29 0.03 0.44 0.79 1.25 0.60
O2 0.06 0.01 0.37 0.25 0.01 0.07 0.02 0.10 0.02 0.02 0.01 0.02 0.00 0.20 0.25 0.15 0.17 0.44 0.46 0.23
O2' 0.02 0.18 0.00 0.02 0.37 0.31 0.42 0.18 0.37 0.22 0.27 0.41 0.20 0.00 0.07 0.21 0.38 0.40 0.68 0.43
O3' 0.27 0.10 0.02 0.01 0.23 0.02 0.29 0.19 0.20 0.05 0.13 0.29 0.25 0.07 0.00 0.16 0.29 0.44 0.59 0.31
O4' 0.01 0.09 0.03 0.03 0.03 0.00 0.07 0.02 0.10 0.02 0.07 0.03 0.15 0.21 0.16 0.00 0.16 0.32 0.40 0.26
O5' 0.19 0.24 0.50 0.37 0.40 0.02 0.46 0.01 0.41 0.27 0.32 0.44 0.17 0.38 0.29 0.16 0.00 0.02 0.02 0.01
OP1 0.35 0.52 0.39 0.36 0.73 0.20 0.79 0.27 0.69 0.52 0.62 0.79 0.44 0.40 0.44 0.32 0.02 0.00 0.01 0.01
OP2 0.28 0.64 0.62 0.61 1.09 0.28 1.14 0.31 0.87 0.59 0.87 1.25 0.46 0.68 0.59 0.40 0.02 0.01 0.00 0.01
P 0.16 0.32 0.48 0.36 0.54 0.07 0.59 0.01 0.48 0.32 0.42 0.60 0.23 0.43 0.31 0.26 0.01 0.01 0.01 0.00