sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCJ-0988-01232
X
>3CCS-0988-01232
X
>1VQM-0988-01232
X
>1YIJ-0988-01232
X
>1VQ4-0988-01232
X
>3CC7-0988-01232
X
>1VQL-0988-01232
X
>1QVG-0988-01232
X
>1Q86-A988-A1232
X
</seq>
<hsp>
0 1:0.423838568413
0 2:0.863240948702
0 3:0.693832839416
0 4:0.684705481694
0 5:0.587750326063
0 6:0.622675082718
0 7:0.729241866895
0 8:0.857108883603
1 2:0.725149476872
1 3:0.407783839878
1 4:0.708356923827
1 5:0.492217303715
1 6:0.525627620117
1 7:0.54767625637
1 8:0.804653066816
2 3:0.704716347948
2 4:0.88437277035
2 5:0.802545714412
2 6:0.444279289583
2 7:0.634648108175
2 8:1.0
3 4:0.625181653129
3 5:0.475209675397
3 6:0.570507312861
3 7:0.284645414463
3 8:0.780103146762
4 5:0.453483159614
4 6:0.692980455889
4 7:0.440252196994
4 8:0.749881278426
5 6:0.458508717825
5 7:0.43518700864
5 8:0.449438371724
6 7:0.52423947434
6 8:0.702053193802
7 8:0.753877513903
</hsp>