sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J01-A1573-A708
X
>3CCM-01823-01427
X
>3CME-01823-01427
X
>2J01-A1001-A988
X
>2J01-A1162-A24
X
>2J03-A1162-A24
X
>3U5D-11113-11101
X
>1VQL-01823-01427
X
>1VQK-01823-01427
X
>1YJN-01823-01427
X
>1VQ9-0653-0197
X
</seq>
<hsp>
0 1:0.779661548284
0 2:0.92717145666
0 3:0.619143629542
0 4:0.585384575867
0 5:0.603461859615
0 6:0.488729648887
0 7:0.646332679662
0 8:0.602719058205
0 9:0.681659860003
0 10:0.535539402629
1 2:0.294731940214
1 3:0.611214078311
1 4:0.637334507647
1 5:0.66459350338
1 6:0.851783171832
1 7:0.218028998415
1 8:0.269987005004
1 9:0.43395901397
1 10:0.401466681392
2 3:0.779573019646
2 4:0.75567423801
2 5:0.787947324504
2 6:0.999997657665
2 7:0.428426040993
2 8:0.465467152168
2 9:0.43488421616
2 10:0.52394011893
3 4:0.355491164287
3 5:0.356479115437
3 6:0.514057889912
3 7:0.55251635408
3 8:0.514281644329
3 9:0.626854968718
3 10:0.392813773868
4 5:0.052671862096
4 6:0.464965508955
4 7:0.52997538919
4 8:0.504051226676
4 9:0.515568083633
4 10:0.357816608558
5 6:0.48030947739
5 7:0.557775029193
5 8:0.535872130751
5 9:0.560215195048
5 10:0.386369219105
6 7:0.691887164156
6 8:0.627368829742
6 9:0.656016293228
6 10:0.543291581701
7 8:0.095519413438
7 9:0.346968822574
7 10:0.272094703438
8 9:0.306585994253
8 10:0.236789341385
9 10:0.323849425007
</hsp>