sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1YJ9-01956-01959
X
>1QVG-01956-01959
X
>3R8S-A2876-A2809
X
>3U5H-52123-52126
X
>2QA4-01955-01958
X
>3R8T-A2875-A2808
X
>2VQF-A488-A520
X
>2UUB-A488-A520
X
>2J00-A488-A520
X
>2J02-A488-A520
X
</seq>
<hsp>
0 1:0.120310890812
0 2:0.328378779254
0 3:0.441464881506
0 4:0.501554869508
0 5:0.658433612522
0 6:0.471912859731
0 7:0.586605970028
0 8:0.855522814198
0 9:0.863601879387
1 2:0.356820461534
1 3:0.438499880504
1 4:0.410352263187
1 5:0.620582112355
1 6:0.441576413417
1 7:0.552409446635
1 8:0.789026344204
1 9:0.798761430864
2 3:0.680523661366
2 4:0.701917875723
2 5:0.510726054289
2 6:0.489570704037
2 7:0.471192332652
2 8:0.714646174178
2 9:0.720491803027
3 4:0.436878960609
3 5:0.87410330615
3 6:0.539454801746
3 7:0.724619422496
3 8:0.990591910609
3 9:1.0
4 5:0.793805925534
4 6:0.524185135207
4 7:0.69900955025
4 8:0.843262587319
4 9:0.85032172505
5 6:0.446727721138
5 7:0.276327959979
5 8:0.395563534214
5 9:0.390779875435
6 7:0.341438580167
6 8:0.608607710312
6 9:0.603794012057
7 8:0.375602881414
7 9:0.376388294193
8 9:0.0462602402204
</hsp>