sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A2508-A1121
X
>2J01-A1203-A816
X
>1YIT-01017-02332
X
>1FFK-01016-02285
X
>3CCJ-01017-02332
X
>3CMA-01017-02332
X
>1N8R-A1017-A2332
X
>3CCR-01017-02332
X
>3CC2-01017-02332
X
</seq>
<hsp>
0 1:0.901443231458
0 2:0.891218327188
0 3:0.879543294304
0 4:1.0
0 5:0.889921227524
0 6:0.870381670374
0 7:0.966517475007
0 8:0.902743824068
1 2:0.473010799332
1 3:0.400238261472
1 4:0.592951168491
1 5:0.452905079973
1 6:0.517880630489
1 7:0.434160409629
1 8:0.378615181792
2 3:0.157466369601
2 4:0.189173308677
2 5:0.13831982775
2 6:0.107406803637
2 7:0.121052803276
2 8:0.143905674063
3 4:0.269624156896
3 5:0.200676436756
3 6:0.209440820638
3 7:0.200398926063
3 8:0.157465640835
4 5:0.214120271604
4 6:0.160436883993
4 7:0.210532900434
4 8:0.222327625873
5 6:0.107260240248
5 7:0.166949324066
5 8:0.113641932822
6 7:0.179545254968
6 8:0.161009855312
7 8:0.128092956832
</hsp>