sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J01-A1947-A2332
X
>3F1F-A2025-A2439
X
>3R8T-A2023-A2447
X
>3OHZ-A1947-A2285
X
>3OH7-A1947-A2285
X
>3KNK-A1946-A2360
X
</seq>
<hsp>
0 1:0.36782514599
0 2:0.675324720674
0 3:0.727700436196
0 4:0.980894845513
0 5:0.895959724277
1 2:0.612388368729
1 3:0.601732027435
1 4:0.882731513258
1 5:0.768842033901
2 3:0.22161728791
2 4:0.51932026093
2 5:0.924008441624
3 4:0.544706215282
3 5:0.926284905323
4 5:1.0
</hsp>