sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNH-A1235-A1293
X
>3R8S-A791-A2065
X
>3OGE-A1244-A1302
X
>1VQK-01288-0893
X
>1VQ4-01288-0893
X
>3CXC-01288-0893
X
>1VQN-01288-0893
X
>1NJI-A1288-A893
X
>1VQ6-01288-0893
X
>1S72-01288-0893
X
>2QEX-01288-0893
X
</seq>
<hsp>
0 1:0.603282339083
0 2:0.614513795313
0 3:0.381772792418
0 4:0.385300392368
0 5:0.325272107247
0 6:0.380450244782
0 7:0.384184172417
0 8:0.363321043069
0 9:0.367872720792
0 10:0.39126748281
1 2:0.99999972355
1 3:0.792604345781
1 4:0.768418718121
1 5:0.73516327634
1 6:0.808115729382
1 7:0.782407634798
1 8:0.782942208294
1 9:0.782011395265
1 10:0.791092510816
2 3:0.401807496597
2 4:0.401046680969
2 5:0.455283989118
2 6:0.355727504483
2 7:0.339173432251
2 8:0.392262718707
2 9:0.390569897118
2 10:0.278513885495
3 4:0.0705748140871
3 5:0.0817442063779
3 6:0.0847847930187
3 7:0.0993456400295
3 8:0.0512872127666
3 9:0.0507940424172
3 10:0.180690284864
4 5:0.0859778352262
4 6:0.127633969994
4 7:0.123195423566
4 8:0.0770753663707
4 9:0.0706347825921
4 10:0.195799799524
5 6:0.139649560769
5 7:0.144301392753
5 8:0.0886971813669
5 9:0.0840517005
5 10:0.218813629744
6 7:0.0776368012968
6 8:0.0667274662651
6 9:0.0879064766494
6 10:0.127894127979
7 8:0.103046161662
7 9:0.102849804018
7 10:0.0952614711141
8 9:0.0419693787376
8 10:0.166726680976
9 10:0.165733954296
</hsp>