sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8S-A1945-A2553
X
>3R8T-A973-A2029
X
>3R8S-A973-A2030
X
>3U5D-12642-12685
X
>3KNH-A872-A1381
X
>3R8N-A907-A1411
X
>3R8T-A1944-A2552
X
>2UXC-A11-A1057
X
>2VQF-A11-A1057
X
>3U5F-610-61294
X
>3U5B-210-21282
X
>1FJG-A11-A1057
X
</seq>
<hsp>
0 1:0.282007148781
0 2:0.178319936067
0 3:0.590334632796
0 4:0.768863325754
0 5:0.648637152839
0 6:0.47591932239
0 7:0.68142644162
0 8:0.598211697146
0 9:0.665384663546
0 10:0.735958045557
0 11:0.696559009211
1 2:0.250392588373
1 3:0.421100433126
1 4:0.595988770299
1 5:0.579822635668
1 6:0.439540237826
1 7:0.584812227977
1 8:0.504462148896
1 9:0.542563387312
1 10:0.635084090148
1 11:0.619736080273
2 3:0.536323306145
2 4:0.689417275555
2 5:0.566627235739
2 6:0.36544280678
2 7:0.624667928845
2 8:0.526144623278
2 9:0.593919024137
2 10:0.664184711557
2 11:0.621644133334
3 4:0.397995391909
3 5:0.440881407066
3 6:0.647318838582
3 7:0.775258450524
3 8:0.743170172416
3 9:0.749321754905
3 10:0.849511546567
3 11:0.837585272687
4 5:0.519151252322
4 6:0.792145379512
4 7:0.966239963225
4 8:0.876197648223
4 9:0.881436355831
4 10:1.0
4 11:0.985935547786
5 6:0.582236748858
5 7:0.789842328555
5 8:0.742464598032
5 9:0.774719520197
5 10:0.855045033053
5 11:0.793395051858
6 7:0.525052858654
6 8:0.44546989305
6 9:0.480723133702
6 10:0.48508654772
6 11:0.451349654219
7 8:0.189691838727
7 9:0.189505767187
7 10:0.200267119222
7 11:0.178711136556
8 9:0.123911359231
8 10:0.207272164182
8 11:0.167395401377
9 10:0.156811890649
9 11:0.182541094344
10 11:0.124931565073
</hsp>