sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1G-A910-A1353
X
>3F1E-A910-A1353
X
>3U5F-6164-663
X
>3OHJ-A1778-A2063
X
>3CCS-02153-01021
X
>3OH7-A1778-A2063
X
>3G71-02153-01021
X
>3OH5-A1778-A2063
X
>2J03-A1778-A2110
X
>2J01-A1778-A2110
X
</seq>
<hsp>
0 1:0.0282989263002
0 2:0.440249289732
0 3:0.786293037217
0 4:0.979349502382
0 5:0.736615692683
0 6:0.921020885616
0 7:0.738858364982
0 8:0.65356262516
0 9:0.669522550391
1 2:0.45025509717
1 3:0.79957489835
1 4:0.999992476939
1 5:0.751764472842
1 6:0.943938759636
1 7:0.754755929826
1 8:0.667086526109
1 9:0.684120686477
2 3:0.393068070847
2 4:0.685945786656
2 5:0.375313131418
2 6:0.731090046273
2 7:0.38523257691
2 8:0.345071265642
2 9:0.347627719504
3 4:0.470611238767
3 5:0.151401335051
3 6:0.648426948551
3 7:0.165880575578
3 8:0.290716665968
3 9:0.261672619855
4 5:0.38237844331
4 6:0.281186631199
4 7:0.363089891032
4 8:0.48849536796
4 9:0.45239268666
5 6:0.536578162384
5 7:0.0531478203567
5 8:0.228227734419
5 9:0.198634676716
6 7:0.51262867108
6 8:0.560347612483
6 9:0.532293020845
7 8:0.215828525618
7 9:0.186343164456
8 9:0.0546373185503
</hsp>