sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNI-A494-A512
X
>3OHJ-A438-A388
X
>3R8S-A422-A372
X
>3U5D-1315-1267
X
>3OH5-A1511-A1301
X
>1K8A-A1615-A1416
X
>3OHJ-A1511-A1301
X
>3OHK-A1511-A1301
X
>1Q81-A1615-A1416
X
>1K9M-A1615-A1416
X
</seq>
<hsp>
0 1:0.439848564537
0 2:0.67731977247
0 3:0.627911311743
0 4:0.958125662308
0 5:0.967284255111
0 6:0.987129128627
0 7:1.0
0 8:0.970405536739
0 9:0.976630921086
1 2:0.436527143264
1 3:0.495352831241
1 4:0.764299275276
1 5:0.809060519102
1 6:0.793320621647
1 7:0.805349195292
1 8:0.797457104094
1 9:0.797300243634
2 3:0.300602534196
2 4:0.448704022748
2 5:0.482769242726
2 6:0.496842815867
2 7:0.513117925511
2 8:0.459883539763
2 9:0.473226623543
3 4:0.400525488257
3 5:0.440824313746
3 6:0.435972627291
3 7:0.450472656175
3 8:0.474552733761
3 9:0.440124183733
4 5:0.185377538272
4 6:0.0866675306439
4 7:0.108359349998
4 8:0.214165521117
4 9:0.181038854802
5 6:0.157006452975
5 7:0.158712946118
5 8:0.129842816394
5 9:0.0806494416779
6 7:0.0369673746131
6 8:0.201487691655
6 9:0.144987679319
7 8:0.20614030588
7 9:0.145477583294
8 9:0.121974101375
</hsp>