sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2ZJR-X1279-X1282
X
>2UXC-A948-A1339
X
>3KNH-A939-A1330
X
>3F1E-A948-A1339
X
>3F1G-A948-A1339
X
>2J02-A948-A1339
X
>2UUB-A948-A1339
X
>2UUA-A948-A1339
X
>1N32-A948-A1339
X
>1FJG-A948-A1339
X
</seq>
<hsp>
0 1:0.922357647881
0 2:0.9634838065
0 3:0.930993614059
0 4:0.932385486095
0 5:0.883731082834
0 6:0.881425202757
0 7:0.955507690103
0 8:0.999999546379
0 9:0.984002472648
1 2:0.310019941603
1 3:0.176924498108
1 4:0.1835282338
1 5:0.325182099945
1 6:0.181636941794
1 7:0.131970614359
1 8:0.165663840848
1 9:0.127320044964
2 3:0.247068165732
2 4:0.242350980871
2 5:0.130646002927
2 6:0.230475179805
2 7:0.290290456483
2 8:0.278556703003
2 9:0.256493549285
3 4:0.0111123534984
3 5:0.229611184191
3 6:0.134417840493
3 7:0.0931674437253
3 8:0.161086926249
3 9:0.180444136771
4 5:0.224518747816
4 6:0.133176428001
4 7:0.101158296726
4 8:0.166348295221
4 9:0.184647594195
5 6:0.19376902235
5 7:0.283145532301
5 8:0.292190030981
5 9:0.281701257792
6 7:0.147246243447
6 8:0.188185993639
6 9:0.160843046827
7 8:0.111823891623
7 9:0.126603085296
8 9:0.107220602478
</hsp>