sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1F-A821-A692
X
>3F1H-A821-A692
X
>3OHJ-A809-A680
X
>3OH7-A809-A680
X
>3OHK-A809-A680
X
>3KNK-A808-A679
X
>3OH5-A809-A680
X
>3R8S-A800-A671
X
>2J03-A809-A680
X
>2J01-A809-A680
X
</seq>
<hsp>
0 1:0.0510351463634
0 2:0.32939498946
0 3:0.354995784709
0 4:0.374465087534
0 5:0.886088565461
0 6:0.304936781694
0 7:0.42141656177
0 8:0.550735680274
0 9:0.531407374355
1 2:0.31077634676
1 3:0.333788215713
1 4:0.347275428226
1 5:0.861400384498
1 6:0.287083029438
1 7:0.419883862274
1 8:0.524600580595
1 9:0.505174787286
2 3:0.191159986028
2 4:0.157214852613
2 5:0.943005226625
2 6:0.146266460083
2 7:0.252793184679
2 8:0.505132289482
2 9:0.492305588193
3 4:0.15021404769
3 5:0.82791077706
3 6:0.106925864902
3 7:0.302595689925
3 8:0.410176951359
3 9:0.408669086222
4 5:0.838680588389
4 6:0.182601655572
4 7:0.332373624765
4 8:0.380110344182
4 9:0.373155478667
5 6:0.866605633597
5 7:0.999999869484
5 8:0.499298534901
5 9:0.508310033189
6 7:0.257993461354
6 8:0.460552152836
6 9:0.453573350977
7 8:0.591981102117
7 9:0.585668523078
8 9:0.0435382285523
</hsp>