sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNK-A995-A976
X
>3R8N-A29-A46
X
>2UXC-A26-A43
X
>2UUB-A26-A43
X
>3OI0-A26-A43
X
>3OHY-A26-A43
X
>2VQE-A26-A43
X
>2VQF-A26-A43
X
>2UUA-A26-A43
X
</seq>
<hsp>
0 1:0.963470863871
0 2:1.0
0 3:0.990667249199
0 4:0.983042940313
0 5:0.983313119877
0 6:0.986110299808
0 7:0.989413392387
0 8:0.980568652293
1 2:0.081553020464
1 3:0.078832546928
1 4:0.0775107352328
1 5:0.0775106714805
1 6:0.059123091722
1 7:0.068729739182
1 8:0.0731440164444
2 3:0.0170529235017
2 4:0.0702792481499
2 5:0.0690092625201
2 6:0.0256992783765
2 7:0.0400454101018
2 8:0.0279692853525
3 4:0.0750875841677
3 5:0.0740297691734
3 6:0.0257916110081
3 7:0.0407875215031
3 8:0.0298596677989
4 5:0.00378711078575
4 6:0.0632821169039
4 7:0.0404859631617
4 8:0.0662614316613
5 6:0.0623955206872
5 7:0.0401353062809
5 8:0.0651239983344
6 7:0.0320173177185
6 8:0.020362326686
7 8:0.0389794604815
</hsp>