sequences=15
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3PDR-A41-A103
X
>1YJN-054-060
X
>3PDR-X41-X103
X
>3OH5-A61-A67
X
>3CXC-054-060
X
>1YIT-054-060
X
>1YJW-054-060
X
>1JJ2-054-060
X
>3CCE-054-060
X
>1NJI-A54-A60
X
>3OHJ-A61-A67
X
>3CC2-054-060
X
>2QEX-054-060
X
>3OHZ-A61-A67
X
>3OI1-A61-A67
X
</seq>
<hsp>
0 1:0.938620080133
0 2:0.0854970759936
0 3:0.962004671113
0 4:0.9451911126
0 5:0.933036670154
0 6:0.933488043665
0 7:0.945543300352
0 8:0.943744154828
0 9:0.946571602078
0 10:0.966852914954
0 11:0.938816962608
0 12:0.929850244711
0 13:0.958300845902
0 14:0.953549794689
1 2:0.972065945927
1 3:0.0869907885725
1 4:0.0524903233213
1 5:0.0427610184298
1 6:0.0386343796196
1 7:0.061394604412
1 8:0.0575721957635
1 9:0.0501336609865
1 10:0.0948770760772
1 11:0.058963487286
1 12:0.07861057109
1 13:0.108749120258
1 14:0.10674288105
2 3:0.994679024725
2 4:0.97695922024
2 5:0.965023762698
2 6:0.965611922025
2 7:0.978845658364
2 8:0.977734162875
2 9:0.979753951843
2 10:0.999998954331
2 11:0.971704691342
2 12:0.959900917328
2 13:0.990840189477
2 14:0.987004105952
3 4:0.0720043119231
3 5:0.0973436272921
3 6:0.106410013354
3 7:0.0677219797177
3 8:0.0875485296345
3 9:0.076969089144
3 10:0.0422870954204
3 11:0.0885294352883
3 12:0.10789489159
3 13:0.0687551140024
3 14:0.076493065993
4 5:0.0468140594318
4 6:0.0486842343274
4 7:0.0639541096142
4 8:0.0726580695967
4 9:0.0535444391972
4 10:0.0727002303574
4 11:0.0663417814577
4 12:0.0498173728522
4 13:0.0879868182604
4 14:0.0911110863279
5 6:0.0498083301169
5 7:0.0629863311218
5 8:0.0515687954365
5 9:0.0430468868691
5 10:0.106193182422
5 11:0.0547907719319
5 12:0.0691970483255
5 13:0.110511885241
5 14:0.110075676138
6 7:0.0859941148442
6 8:0.0820743447972
6 9:0.0709000994025
6 10:0.104635255904
6 11:0.0768951764962
6 12:0.0587253958407
6 13:0.119953476511
6 14:0.118682749777
7 8:0.046480464579
7 9:0.0312704138674
7 10:0.0810256700218
7 11:0.0299104475818
7 12:0.0846051554661
7 13:0.0667941196197
7 14:0.0654968721693
8 9:0.0263370128058
8 10:0.0963482246643
8 11:0.0380616510665
8 12:0.0983655310791
8 13:0.0903803202082
8 14:0.0858217408213
9 10:0.0845149918912
9 11:0.0256142493403
9 12:0.0784760660979
9 13:0.0771043809148
9 14:0.0748719881968
10 11:0.0931312599413
10 12:0.0989235210645
10 13:0.0632046025421
10 14:0.0668085205115
11 12:0.0757683808016
11 13:0.0754052674606
11 14:0.0706844370285
12 13:0.0999201851077
12 14:0.100836030056
13 14:0.0196911414697
</hsp>