sequences=13
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5D-11229-11167
X
>3OHD-A464-A437
X
>1FJG-A464-A437
X
>1Q86-B77-B102
X
>1VQN-967-912
X
>3CD6-967-912
X
>1VQO-967-912
X
>3I56-967-912
X
>1Q86-B67-B12
X
>3CC7-967-912
X
>3CCL-967-912
X
>1VQ7-967-912
X
>1NJI-B67-B12
X
</seq>
<hsp>
0 1:0.448244334543
0 2:0.401224287214
0 3:0.498470092254
0 4:0.982163297808
0 5:0.986526800296
0 6:0.995026435834
0 7:0.996680970077
0 8:0.983003480005
0 9:0.977733682849
0 10:1.0
0 11:0.991113529422
0 12:0.982209477987
1 2:0.0896339034586
1 3:0.101008663979
1 4:0.648299761111
1 5:0.652026044846
1 6:0.657757767181
1 7:0.659468809442
1 8:0.649421266899
1 9:0.646955808633
1 10:0.660752256102
1 11:0.654580933807
1 12:0.651867232052
2 3:0.154872706323
2 4:0.666719234815
2 5:0.672041665251
2 6:0.678198229658
2 7:0.680046485363
2 8:0.667677397674
2 9:0.664915199301
2 10:0.681151212932
2 11:0.67354105076
2 12:0.670558789038
3 4:0.613242533749
3 5:0.616108741
3 6:0.623614012755
3 7:0.628447717743
3 8:0.61970676995
3 9:0.615616425862
3 10:0.626632841542
3 11:0.621376903864
3 12:0.619832668014
4 5:0.019086796035
4 6:0.0291488901742
4 7:0.0502273697167
4 8:0.0421280805941
4 9:0.0277586967232
4 10:0.0344327548421
4 11:0.0217489502053
4 12:0.0327383133215
5 6:0.0300434026717
5 7:0.0486798924876
5 8:0.0462550851126
5 9:0.0336326194565
5 10:0.0357983156746
5 11:0.0292003770829
5 12:0.0350705900701
6 7:0.0287521951839
6 8:0.0354037717157
6 9:0.0322798051246
6 10:0.0167965715678
6 11:0.0206144880944
6 12:0.026046706326
7 8:0.0248386889833
7 9:0.0389724989625
7 10:0.0273877282985
7 11:0.0335065027448
7 12:0.031568314243
8 9:0.0244714389423
8 10:0.0355071787051
8 11:0.028042113248
8 12:0.0261409039461
9 10:0.0403023816709
9 11:0.0256679045356
9 12:0.0206510882112
10 11:0.0195526497565
10 12:0.0345093875967
11 12:0.0297315600121
</hsp>