sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J01-A2242-A2229
X
>1FJG-A916-A1315
X
>2UUA-A1454-A1395
X
>1YJ9-01443-01418
X
>3R8T-A2357-A2344
X
>3OH5-A1783-A1800
X
>2ZJR-X2442-X2452
X
>1ASY-R16-R56
X
>3FOZ-D14-D54
X
</seq>
<hsp>
0 1:0.0825408219873
0 2:0.0538992897205
0 3:0.127032180883
0 4:0.0656289377706
0 5:0.0581728962951
0 6:0.530735345438
0 7:0.583686959948
0 8:0.536601460293
1 2:0.0646124495086
1 3:0.0555268240464
1 4:0.0527784127663
1 5:0.0894707309234
1 6:0.561916653456
1 7:0.589204111317
1 8:0.537971033403
2 3:0.0980406378003
2 4:0.0821898084134
2 5:0.0993481837443
2 6:0.505149195082
2 7:0.616544932083
2 8:0.567618196671
3 4:0.0958918498807
3 5:0.13236649856
3 6:0.568379413271
3 7:0.615814031567
3 8:0.564344891016
4 5:0.04358044281
4 6:0.582386116831
4 7:0.560981762856
4 8:0.511452506164
5 6:0.585515852026
5 7:0.546200228079
5 8:0.498876965376
6 7:0.999999760035
6 8:0.966649280251
7 8:0.0675764915716
</hsp>