sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3G8T-P108-P111
X
>2UUA-A370-A373
X
>3OHY-A1242-A1245
X
>2VQE-A370-A373
X
>3CME-0679-0682
X
>1KXK-A33-A36
X
>3R8T-A1536-A1521
X
>1M5V-B74-B77
X
</seq>
<hsp>
0 1:0.811707470908
0 2:0.579996886666
0 3:0.786359247111
0 4:0.946186907321
0 5:0.999999893476
0 6:0.953823089561
0 7:0.900743995707
1 2:0.406066247603
1 3:0.0468591728544
1 4:0.185242856966
1 5:0.323227453703
1 6:0.471699640546
1 7:0.14788338858
2 3:0.389991728914
2 4:0.476374705242
2 5:0.61935678422
2 6:0.667070279869
2 7:0.513627094605
3 4:0.212833922178
3 5:0.335234172608
3 6:0.46089722597
3 7:0.160834992403
4 5:0.25834359013
4 6:0.467622246517
4 7:0.187542432513
5 6:0.298849851467
5 7:0.29776176077
6 7:0.490795588378
</hsp>