sequences=16
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1H4Q-T44-T43
X
>3F1E-A1154-A1157
X
>3F1G-A1154-A1157
X
>2UUB-A1154-A1157
X
>3CME-0552-0580
X
>1VQO-0552-0580
X
>1VQK-0552-0580
X
>3R8O-A1176-A1179
X
>1VQP-0552-0580
X
>1VQ9-0552-0580
X
>1VQ8-0552-0580
X
>3CCM-0552-0580
X
>1VQL-0552-0580
X
>1YHQ-0552-0580
X
>3F1H-A1490-A1540
X
>3F1F-A1490-A1540
X
</seq>
<hsp>
0 1:0.928088190815
0 2:0.928161402192
0 3:0.999999686596
0 4:0.410150073024
0 5:0.403301856141
0 6:0.419834824585
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0 11:0.427329855167
0 12:0.416979980726
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0 14:0.722688616465
0 15:0.721379079567
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1 10:0.959860008424
1 11:0.943012878103
1 12:0.946455618435
1 13:0.967784555049
1 14:0.514355086998
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2 3:0.1946099481
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8 12:0.00859287537006
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10 11:0.0342231141961
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10 13:0.0318491245617
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11 12:0.017118205578
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12 13:0.037232467273
12 14:0.59384565375
12 15:0.591867928871
13 14:0.612096782931
13 15:0.610042551065
14 15:0.00378886127763
</hsp>