sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1H-A1738-A1741
X
>3F1F-A1738-A1741
X
>1XMQ-A1149-A1152
X
>1G1X-E11-E14
X
>2J02-A1154-A1157
X
>2J00-A1154-A1157
X
>2UUA-A1154-A1157
X
>1N32-A1154-A1157
X
>2VQE-A1154-A1157
X
>3Q51-A7-A10
X
>1FJG-A1154-A1157
X
</seq>
<hsp>
0 1:0.00636185669961
0 2:0.839571838465
0 3:0.606047809473
0 4:0.998245565886
0 5:0.998813994061
0 6:0.837870228722
0 7:0.837763368123
0 8:0.934442027647
0 9:0.792000446255
0 10:0.781670710647
1 2:0.841221118462
1 3:0.604688987811
1 4:0.999445489089
1 5:0.999999072121
1 6:0.8391074318
1 7:0.838920375032
1 8:0.936322367015
1 9:0.795699193836
1 10:0.783500971042
2 3:0.597324579509
2 4:0.305836186028
2 5:0.306559863223
2 6:0.118525306666
2 7:0.0976014216725
2 8:0.512607912848
2 9:0.62420678597
2 10:0.108572832613
3 4:0.694623826319
3 5:0.694789708109
3 6:0.520669798597
3 7:0.546719599409
3 8:0.759959714939
3 9:0.798568259229
3 10:0.544026232994
4 5:0.00372492946255
4 6:0.276794863883
4 7:0.305864031885
4 8:0.392792382902
4 9:0.710809697627
4 10:0.340454413104
5 6:0.277259375614
5 7:0.305873714575
5 8:0.394475898811
5 9:0.713112263559
5 10:0.341550600907
6 7:0.0947105724667
6 8:0.503586074913
6 9:0.646539770569
6 10:0.144700345677
7 8:0.552141237899
7 9:0.690035096313
7 10:0.129708793686
8 9:0.45745773144
8 10:0.5163214752
9 10:0.602473566321
</hsp>