sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1E-A554-A738
X
>3F1G-A554-A738
X
>3OHD-A554-A738
X
>3OHC-A554-A738
X
>2VQE-A554-A738
X
>1XMQ-A554-A738
X
>2VQF-A554-A738
X
>2UUA-A554-A738
X
>2UXC-A554-A738
X
>2UUB-A554-A738
X
>1N32-A554-A738
X
</seq>
<hsp>
0 1:0.0354707700138
0 2:0.633415944225
0 3:0.638389972729
0 4:0.783617644517
0 5:0.999815869199
0 6:0.513521588615
0 7:0.536935695469
0 8:0.608974346843
0 9:0.772118327411
0 10:0.642901844366
1 2:0.62667723619
1 3:0.630635456398
1 4:0.776149239217
1 5:1.0
1 6:0.509276237766
1 7:0.529392280394
1 8:0.601368313737
1 9:0.763299166449
1 10:0.633458555876
2 3:0.0437203230609
2 4:0.213953056963
2 5:0.639664124675
2 6:0.313807379509
2 7:0.308963157772
2 8:0.310058016972
2 9:0.441832391185
2 10:0.212630521831
3 4:0.206719200389
3 5:0.630371450657
3 6:0.305211898324
3 7:0.29620887011
3 8:0.314001202498
3 9:0.451615721114
3 10:0.208731503849
4 5:0.588482877348
4 6:0.359299095626
4 7:0.32444026632
4 8:0.326370857855
4 9:0.420431076673
4 10:0.246768917983
5 6:0.597510333706
5 7:0.634004162963
5 8:0.794003658315
5 9:0.918373200653
5 10:0.739317181783
6 7:0.100729675386
6 8:0.383394457442
6 9:0.576741135271
6 10:0.365018257317
7 8:0.331927892078
7 9:0.516429662864
7 10:0.308562409892
8 9:0.256362930704
8 10:0.203945541289
9 10:0.30091269747
</hsp>