sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OH5-A350-A335
X
>3OH7-A350-A335
X
>2ZJR-X295-X280
X
>2J01-A350-A335
X
>2J03-A350-A335
X
>3U5D-1224-1209
X
>3U5H-5224-5209
X
>3KNI-A350-A335
X
>2J03-A2053-A2032
X
>2J01-A2053-A2032
X
</seq>
<hsp>
0 1:0.0220526941733
0 2:0.121976781678
0 3:0.12536643188
0 4:0.126663725349
0 5:0.189568132473
0 6:0.112869429284
0 7:0.0669731590302
0 8:0.872638081757
0 9:0.873226883699
1 2:0.140340278431
1 3:0.143438796685
1 4:0.144586199934
1 5:0.208907871251
1 6:0.131971144457
1 7:0.0852346506871
1 8:0.861258081927
1 9:0.861828830184
2 3:0.0781335103039
2 4:0.079309276088
2 5:0.0881527866726
2 6:0.039117651623
2 7:0.0785990901826
2 8:0.934214168934
2 9:0.934873120164
3 4:0.00570184039974
3 5:0.0817698940669
3 6:0.0572462596563
3 7:0.0893433240245
3 8:0.957367089085
3 9:0.958024851621
4 5:0.0816354437678
4 6:0.0592530670725
4 7:0.091508439231
4 8:0.958884028067
4 9:0.959543976854
5 6:0.0843095324374
5 7:0.143484974188
5 8:0.999307382609
5 9:0.999998812229
6 7:0.0783378781057
6 8:0.935267748876
6 9:0.935920447975
7 8:0.906833070493
7 9:0.907474754011
8 9:0.00125342480189
</hsp>