sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3EPH-E54-E16
X
>3FOZ-D53-D15
X
>4TRA-A56-A18
X
>1TTT-D56-D18
X
>1TTT-E56-E18
X
>1TTT-F56-F18
X
>1TN1-A56-A18
X
>1TN2-A56-A18
X
>3FOZ-C56-C18
X
</seq>
<hsp>
0 1:0.733434970451
0 2:0.600716724918
0 3:0.766022003746
0 4:0.97289235603
0 5:0.999999116978
0 6:0.648144053633
0 7:0.648144053633
0 8:0.759124834291
1 2:0.235315513909
1 3:0.252825682035
1 4:0.292942238918
1 5:0.363692282978
1 6:0.214411388014
1 7:0.214411388014
1 8:0.120668700152
2 3:0.431533672366
2 4:0.49440039007
2 5:0.559685503789
2 6:0.199587054771
2 7:0.199587054771
2 8:0.309259492004
3 4:0.311275619867
3 5:0.340519823457
3 6:0.339663109743
3 7:0.339663109743
3 8:0.196999927506
4 5:0.270271220682
4 6:0.433525788659
4 7:0.433525788659
4 8:0.236882898771
5 6:0.486201631185
5 7:0.486201631185
5 8:0.347746996711
6 7:0.0
6 8:0.256503508906
7 8:0.256503508906
</hsp>