sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8N-A411-A427
X
>3CCM-02378-01318
X
>2QA4-02377-01317
X
>3CC7-02378-01318
X
>3R8T-A2494-A1248
X
>3CCU-02378-01318
X
>3CD6-02378-01318
X
>3R8S-A2495-A1248
X
>3CCJ-02378-01318
X
>1VQ9-02378-01318
X
</seq>
<hsp>
0 1:0.999998071785
0 2:0.879151546701
0 3:0.888497644924
0 4:0.895831361331
0 5:0.939916565399
0 6:0.921946280417
0 7:0.848791263974
0 8:0.878047851901
0 9:0.894474544221
1 2:0.310454814922
1 3:0.281567554433
1 4:0.372366784119
1 5:0.228314420392
1 6:0.225299078205
1 7:0.383648112825
1 8:0.252274441284
1 9:0.265564734782
2 3:0.0886754543793
2 4:0.205498563365
2 5:0.117271797392
2 6:0.122409876368
2 7:0.124443509648
2 8:0.135849794085
2 9:0.122612699527
3 4:0.22361442138
3 5:0.0877428367315
3 6:0.0664674989296
3 7:0.147885045281
3 8:0.092267135956
3 9:0.0448637456734
4 5:0.267587051239
4 6:0.245677539909
4 7:0.155474038086
4 8:0.286675972416
4 9:0.256867372042
5 6:0.0488934500222
5 7:0.204668028481
5 8:0.081850425287
5 9:0.0831521071218
6 7:0.191798142186
6 8:0.0747999095269
6 9:0.0540743538572
7 8:0.202318444913
7 9:0.184456281795
8 9:0.0705027454409
</hsp>