sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J03-A2747-A2566
X
>2J01-A2747-A2566
X
>3KNI-A2775-A2594
X
>3B31-A18-B8
X
>3MJB-A18-B8
X
>3MJA-B18-C8
X
>2UUB-A403-A419
X
>2VQE-A403-A419
X
>2J02-A403-A419
X
>2J00-A403-A419
X
</seq>
<hsp>
0 1:0.00448555415604
0 2:0.117895969848
0 3:0.291104302417
0 4:0.295483754053
0 5:0.288920089634
0 6:0.995398962895
0 7:1.0
0 8:0.986258699209
0 9:0.98590618983
1 2:0.117267639786
1 3:0.289856041431
1 4:0.294763575398
1 5:0.288057489862
1 6:0.992414717132
1 7:0.996834569981
1 8:0.983156686081
1 9:0.982795182064
2 3:0.248209033137
2 4:0.292164169065
2 5:0.279302573992
2 6:0.978112338027
2 7:0.982250829353
2 8:0.970945396623
2 9:0.97040167067
3 4:0.120758233351
3 5:0.0968214072315
3 6:0.848564739014
3 7:0.847329811138
3 8:0.831542765546
3 9:0.83030553948
4 5:0.0379270155136
4 6:0.82296858379
4 7:0.820533840896
4 8:0.806632418799
4 9:0.805164754245
5 6:0.833130910731
5 7:0.831087050814
5 8:0.816473833732
5 9:0.815067848796
6 7:0.0256394146123
6 8:0.0554283285911
6 9:0.0548465883484
7 8:0.0556965661962
7 9:0.0549854028688
8 9:0.00360120081234
</hsp>