sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCM-02019-02448
X
>3ADB-D53-D56
X
>3CME-02019-02448
X
>1VQ9-02019-02448
X
>1VQN-02019-02448
X
>3CMA-02019-02448
X
>1VQK-02019-02448
X
>1VQ8-02019-02448
X
</seq>
<hsp>
0 1:0.9842813053
0 2:0.0341100718339
0 3:0.0138528367949
0 4:0.0235784644684
0 5:0.0256242606543
0 6:0.0195533843759
0 7:0.0187780671319
1 2:1.0
1 3:0.985678068608
1 4:0.997109900054
1 5:0.99348305695
1 6:0.99027589007
1 7:0.991037627321
2 3:0.0262240961255
2 4:0.0227488568092
2 5:0.0135538128898
2 6:0.0193182756913
2 7:0.0197378205246
3 4:0.0187531483669
3 5:0.016703225446
3 6:0.0120778062853
3 7:0.0108578121173
4 5:0.0129770270732
4 6:0.010655957523
4 7:0.0100073868882
5 6:0.00915122660366
5 7:0.00830342976835
6 7:0.00514422647659
</hsp>