sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OHY-A1146-A1067
X
>1HR2-A84-A79
X
>3CC2-0417-0370
X
>1N8R-A417-A370
X
>3CCR-0724-02225
X
>3U5D-12106-12135
X
</seq>
<hsp>
0 1:0.836623154131
0 2:0.583943046836
0 3:0.576917710733
0 4:0.22560746036
0 5:0.532000074563
1 2:0.799256764684
1 3:0.792473901588
1 4:0.879052473493
1 5:1.0
2 3:0.049906929048
2 4:0.566499964717
2 5:0.442038292847
3 4:0.565991590989
3 5:0.428152323652
4 5:0.444983220155
</hsp>