sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OI1-A999-A1000
X
>2ZH9-B24-B25
X
>2ZJR-X441-X442
X
>2J01-A441-A442
X
>3F1F-A1017-A1018
X
>1VQ5-01782-01783
X
>2ZJR-X720-X721
X
>1K8A-A112-A113
X
>3G6E-01782-01783
X
>3G71-01782-01783
X
>3CC2-01782-01783
X
>1VQ7-01782-01783
X
</seq>
<hsp>
0 1:0.667404316308
0 2:0.873805091665
0 3:0.62324634825
0 4:0.378281181883
0 5:0.569383100678
0 6:0.565435117025
0 7:0.457033769788
0 8:0.579588331127
0 9:0.498992421824
0 10:0.588709958405
0 11:0.53900146417
1 2:0.468804659574
1 3:0.394116333843
1 4:0.836286897703
1 5:0.652774317785
1 6:0.699651528672
1 7:0.597581760741
1 8:0.673614089287
1 9:0.634280486633
1 10:0.716895243252
1 11:0.647672430699
2 3:0.343456645419
2 4:1.0
2 5:0.792915726562
2 6:0.807433132344
2 7:0.758010913145
2 8:0.794634808373
2 9:0.811725890823
2 10:0.873363358462
2 11:0.779626098322
3 4:0.736327282753
3 5:0.67739217018
3 6:0.709970686304
3 7:0.610325241844
3 8:0.681802111763
3 9:0.665008986321
3 10:0.757750895091
3 11:0.664503912623
4 5:0.67538206258
4 6:0.626396249836
4 7:0.504189625715
4 8:0.711246080348
4 9:0.634028660976
4 10:0.718069705925
4 11:0.669348192155
5 6:0.185261547243
5 7:0.236208143013
5 8:0.0876517115631
5 9:0.0993277816576
5 10:0.120649628189
5 11:0.070433464799
6 7:0.173662727042
6 8:0.226786889935
6 9:0.230876414285
6 10:0.22412210442
6 11:0.177344590825
7 8:0.293085976911
7 9:0.240457083385
7 10:0.302294520879
7 11:0.234361273775
8 9:0.113077428833
8 10:0.110685411685
8 11:0.0798061992489
9 10:0.122891048359
9 11:0.0979205290552
10 11:0.108681124942
</hsp>