sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNK-A2000-A2001
X
>3OHZ-A2381-A2382
X
>3CMA-0959-0960
X
>2QEX-0336-0337
X
>3F1F-A2535-A2536
X
>3F1H-A2535-A2536
X
>2OTJ-01127-01128
X
>1JJ2-0336-0337
X
>1YJW-0336-0337
X
>3I56-01774-01775
X
</seq>
<hsp>
0 1:0.43019541938
0 2:1.0
0 3:0.901007925857
0 4:0.422845884248
0 5:0.421922331913
0 6:0.979649356925
0 7:0.926258762488
0 8:0.909055967747
0 9:0.938673684484
1 2:0.791797786975
1 3:0.594177450826
1 4:0.401280123564
1 5:0.364280818857
1 6:0.763530991106
1 7:0.639214998249
1 8:0.592496168406
1 9:0.62138266401
2 3:0.631577002374
2 4:0.80018061843
2 5:0.793994058955
2 6:0.554192278891
2 7:0.365539190006
2 8:0.398817175098
2 9:0.521284618706
3 4:0.796637426033
3 5:0.775557909235
3 6:0.789460700652
3 7:0.47614404232
3 8:0.448456720648
3 9:0.635299865886
4 5:0.0671054803161
4 6:0.712506943547
4 7:0.706656507793
4 8:0.658016341646
4 9:0.711050218876
5 6:0.724931624068
5 7:0.701013357838
5 8:0.64529339175
5 9:0.699237471751
6 7:0.346600887833
6 8:0.402863954111
6 9:0.300699222082
7 8:0.144511352821
7 9:0.256020810648
8 9:0.271323045662
</hsp>