sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A2240-A2241
X
>1VQ4-02127-02128
X
>3G6E-02002-02003
X
>3U5H-52369-52370
X
>1VQK-01948-01949
X
>3CC2-01948-01949
X
>1YHQ-01948-01949
X
>3CCE-01948-01949
X
>1Q82-A1948-A1949
X
</seq>
<hsp>
0 1:0.363912605084
0 2:0.837713154221
0 3:0.478241006389
0 4:0.730494109623
0 5:0.845896310012
0 6:0.808607159183
0 7:1.0
0 8:0.853528325047
1 2:0.558117823763
1 3:0.2142338272
1 4:0.451292871832
1 5:0.599815656849
1 6:0.527540949052
1 7:0.732860526689
1 8:0.587739444613
2 3:0.467214030532
2 4:0.574893690742
2 5:0.565111529426
2 6:0.461541018484
2 7:0.657267052104
2 8:0.482952736994
3 4:0.38951834718
3 5:0.61375818904
3 6:0.501859948724
3 7:0.686758536107
3 8:0.549821002093
4 5:0.520290739855
4 6:0.360323538859
4 7:0.477983353616
4 8:0.40758561269
5 6:0.192844607576
5 7:0.448859523769
5 8:0.197373104976
6 7:0.385416261735
6 8:0.124748474953
7 8:0.349169661463
</hsp>