sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2CV2-D31-D32
X
>1VQM-02127-02128
X
>3CCU-02127-02128
X
>2QA4-02542-02543
X
>3CCM-02543-02544
X
>1K9M-A2543-A2544
X
>2J01-A1611-A1612
X
>1YIT-0124-0125
X
>2OTJ-0124-0125
X
</seq>
<hsp>
0 1:0.376436391582
0 2:0.363987881153
0 3:1.0
0 4:0.864077817818
0 5:0.819546960178
0 6:0.58392824192
0 7:0.87373869642
0 8:0.814891086013
1 2:0.210008052539
1 3:0.683555855554
1 4:0.543325624854
1 5:0.521246879951
1 6:0.594754635748
1 7:0.724346222993
1 8:0.725056769676
2 3:0.711721549636
2 4:0.639021880233
2 5:0.592365619176
2 6:0.640646134954
2 7:0.871789763648
2 8:0.863047850737
3 4:0.356272760901
3 5:0.370863306215
3 6:0.946132692338
3 7:0.853905517952
3 8:0.89913836476
4 5:0.183454573057
4 6:0.751055511546
4 7:0.62262206411
4 8:0.701146274641
5 6:0.729424368395
5 7:0.607434831545
5 8:0.700813132074
6 7:0.567755271022
6 8:0.533880741938
7 8:0.237697287258
</hsp>